IL_6R6G_183
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAAA*UGACG
- Length
- 9 nucleotides
- Bulged bases
- 6R6G|1|K|A|516
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_183 not in the Motif Atlas
- Geometric match to IL_4WF9_016
- Geometric discrepancy: 0.3317
- The information below is about IL_4WF9_016
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
6R6G|1|K|C|37
6R6G|1|K|A|38
6R6G|1|K|A|39
6R6G|1|K|A|40
*
6R6G|1|K|U|514
6R6G|1|K|G|515
6R6G|1|K|A|516
6R6G|1|K|C|517
6R6G|1|K|G|518
Current chains
- Chain K
- 18S ribosomal RNA
Nearby chains
- Chain AE
- Signal recognition particle 14 kDa protein
- Chain DD
- Ribosomal protein S9 (Predicted)
- Chain NN
- 40S ribosomal protein S24
- Chain x
- 40S ribosomal protein S4
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