3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CAAA*UGACG
Length
9 nucleotides
Bulged bases
6R6G|1|K|A|516
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R6G_183 not in the Motif Atlas
Geometric match to IL_4WF9_016
Geometric discrepancy: 0.3317
The information below is about IL_4WF9_016
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.15
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

6R6G|1|K|C|37
6R6G|1|K|A|38
6R6G|1|K|A|39
6R6G|1|K|A|40
*
6R6G|1|K|U|514
6R6G|1|K|G|515
6R6G|1|K|A|516
6R6G|1|K|C|517
6R6G|1|K|G|518

Current chains

Chain K
18S ribosomal RNA

Nearby chains

Chain AE
Signal recognition particle 14 kDa protein
Chain DD
Ribosomal protein S9 (Predicted)
Chain NN
40S ribosomal protein S24
Chain x
40S ribosomal protein S4

Coloring options:


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