IL_6R6G_185

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_185 not in the Motif Atlas

Homologous match to IL_4V88_388

Geometric discrepancy: 0.1972

The information below is about IL_4V88_388

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6R6G|1|K|C|49
6R6G|1|K|A|50
6R6G|1|K|U|51
*
6R6G|1|K|A|476
6R6G|1|K|G|477

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain AD

Signal recognition particle 9 kDa protein

Chain AE

Signal recognition particle 14 kDa protein

Chain NN

40S ribosomal protein S24