3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UCCUUU*AUUCG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R6G_191 not in the Motif Atlas
Homologous match to IL_4V88_393
Geometric discrepancy: 0.2244
The information below is about IL_4V88_393
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_37842.2
Basepair signature
cWW-cWW-L-R-cWW-cWW-R-L
Number of instances in this motif group
4

Unit IDs

6R6G|1|K|U|116
6R6G|1|K|C|117
6R6G|1|K|C|118
6R6G|1|K|U|119
6R6G|1|K|U|120
6R6G|1|K|U|121
*
6R6G|1|K|A|343
6R6G|1|K|U|344
6R6G|1|K|U|345
6R6G|1|K|C|346
6R6G|1|K|G|347

Current chains

Chain K
18S ribosomal RNA

Nearby chains

Chain CC
40S ribosomal protein S8
Chain x
40S ribosomal protein S4

Coloring options:


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