IL_6R6G_194

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGUG*UAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_194 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.2603

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6R6G|1|K|U|152
6R6G|1|K|G|153
6R6G|1|K|U|154
6R6G|1|K|G|155
*
6R6G|1|K|U|163
6R6G|1|K|A|164
6R6G|1|K|G|165
6R6G|1|K|A|166

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain NN

40S ribosomal protein S24

Chain W

Ribosomal protein L24

Chain z

40S ribosomal protein S6