IL_6R6G_201

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6R6G|1|K|U|368, 6R6G|1|K|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_201 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2977

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59877.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6R6G|1|K|U|366
6R6G|1|K|U|367
6R6G|1|K|U|368
6R6G|1|K|C|369
6R6G|1|K|G|370
6R6G|1|K|A|371
*
6R6G|1|K|U|393
6R6G|1|K|G|394

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain CC

40S ribosomal protein S8

Chain EE

Ribosomal protein S11

Chain R

60S ribosomal protein L19