IL_6R6G_210

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_210 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.1624

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

6R6G|1|K|G|563
6R6G|1|K|A|564
6R6G|1|K|G|565
*
6R6G|1|K|C|585
6R6G|1|K|G|586
6R6G|1|K|A|587
6R6G|1|K|G|588
6R6G|1|K|G|589
6R6G|1|K|A|590
6R6G|1|K|U|591
6R6G|1|K|C|592

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein S30

Chain DD

Ribosomal protein S9 (Predicted)