3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GAG*CGAGGAUC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R6G_210 not in the Motif Atlas
Homologous match to IL_8C3A_420
Geometric discrepancy: 0.1624
The information below is about IL_8C3A_420
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_14882.1
Basepair signature
cWW-tSH-L-cWW-L-L-R-L
Number of instances in this motif group
1

Unit IDs

6R6G|1|K|G|563
6R6G|1|K|A|564
6R6G|1|K|G|565
*
6R6G|1|K|C|585
6R6G|1|K|G|586
6R6G|1|K|A|587
6R6G|1|K|G|588
6R6G|1|K|G|589
6R6G|1|K|A|590
6R6G|1|K|U|591
6R6G|1|K|C|592

Current chains

Chain K
18S ribosomal RNA

Nearby chains

Chain AA
40S ribosomal protein S30
Chain DD
Ribosomal protein S9 (Predicted)

Coloring options:


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