IL_6R6G_212
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AGGGCAAGUC*GCU
- Length
- 13 nucleotides
- Bulged bases
- 6R6G|1|K|U|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_212 not in the Motif Atlas
- Geometric match to IL_4V88_470
- Geometric discrepancy: 0.2055
- The information below is about IL_4V88_470
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6R6G|1|K|A|599
6R6G|1|K|G|600
6R6G|1|K|G|601
6R6G|1|K|G|602
6R6G|1|K|C|603
6R6G|1|K|A|604
6R6G|1|K|A|605
6R6G|1|K|G|606
6R6G|1|K|U|607
6R6G|1|K|C|608
*
6R6G|1|K|G|635
6R6G|1|K|C|636
6R6G|1|K|U|637
Current chains
- Chain K
- 18S ribosomal RNA
Nearby chains
- Chain AA
- 40S ribosomal protein S30
- Chain DD
- Ribosomal protein S9 (Predicted)
- Chain v
- uS5
- Chain w
- Ribosomal protein S3
Coloring options: