IL_6R6G_218

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAG*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_218 not in the Motif Atlas

Geometric match to IL_7A0S_014

Geometric discrepancy: 0.1588

The information below is about IL_7A0S_014

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6R6G|1|K|G|692
6R6G|1|K|A|693
6R6G|1|K|G|694
*
6R6G|1|K|U|732
6R6G|1|K|C|733
6R6G|1|K|C|734

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain BB

40S ribosomal protein S7

Chain TT

Ribosomal protein S15a