IL_6R6G_219

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_219 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.216

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

6R6G|1|K|C|745
6R6G|1|K|U|749
*
6R6G|1|K|A|794
6R6G|1|K|A|795
6R6G|1|K|G|796

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain EE

Ribosomal protein S11

Chain x

40S ribosomal protein S4