3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UUG*CUA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R6G_222 not in the Motif Atlas
Homologous match to IL_4V88_424
Geometric discrepancy: 0.3079
The information below is about IL_4V88_424
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

6R6G|1|K|U|805
6R6G|1|K|U|806
6R6G|1|K|G|807
*
6R6G|1|K|C|856
6R6G|1|K|U|857
6R6G|1|K|A|858

Current chains

Chain K
18S ribosomal RNA

Nearby chains

Chain EE
Ribosomal protein S11
Chain TT
Ribosomal protein S15a
Chain x
40S ribosomal protein S4

Coloring options:


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