3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
AGGUUC*GUU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R6G_232 not in the Motif Atlas
Geometric match to IL_4V88_435
Geometric discrepancy: 0.1671
The information below is about IL_4V88_435
Detailed Annotation
Other IL
Broad Annotation
Other IL
Motif group
IL_22046.1
Basepair signature
cWW-L-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

6R6G|1|K|A|1042
6R6G|1|K|G|1043
6R6G|1|K|G|1044
6R6G|1|K|U|1045
6R6G|1|K|U|1046
6R6G|1|K|C|1047
*
6R6G|1|K|G|1071
6R6G|1|K|U|1072
6R6G|1|K|U|1073

Current chains

Chain K
18S ribosomal RNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain A
uL2
Chain LL
40S ribosomal protein S26
Chain MM
40S ribosomal protein S14

Coloring options:


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