3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CAUGC*GAGG
Length
9 nucleotides
Bulged bases
6R6G|1|K|U|1397
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R6G_254 not in the Motif Atlas
Geometric match to IL_3CUL_002
Geometric discrepancy: 0.3766
The information below is about IL_3CUL_002
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_30621.4
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
66

Unit IDs

6R6G|1|K|C|1395
6R6G|1|K|A|1396
6R6G|1|K|U|1397
6R6G|1|K|G|1398
6R6G|1|K|C|1399
*
6R6G|1|K|G|1447
6R6G|1|K|A|1448
6R6G|1|K|G|1449
6R6G|1|K|G|1450

Current chains

Chain K
18S ribosomal RNA

Nearby chains

Chain 6
ribosomal protein RACK1
Chain GG
Ribosomal protein S20
Chain KK
eS17
Chain UU
Ribosomal protein S16

Coloring options:


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