IL_6R6G_256

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

6R6G|1|K|G|1428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_256 not in the Motif Atlas

Geometric match to IL_5J7L_019

Geometric discrepancy: 0.2642

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6R6G|1|K|C|1412
6R6G|1|K|G|1413
*
6R6G|1|K|C|1427
6R6G|1|K|G|1428
6R6G|1|K|G|1429

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain PP

eS19

Chain UU

Ribosomal protein S16