IL_6R6G_260

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_260 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1067

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6R6G|1|K|G|1604
6R6G|1|K|G|1605
6R6G|1|K|G|1606
6R6G|1|K|A|1607
6R6G|1|K|U|1608
6R6G|1|K|C|1609
6R6G|1|K|G|1610
*
6R6G|1|K|C|1629
6R6G|1|K|A|1630
6R6G|1|K|U|1631
6R6G|1|K|G|1632
6R6G|1|K|A|1633
6R6G|1|K|A|1634
6R6G|1|K|C|1635

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain II

uS13

Chain PP

eS19

Chain y

Ribosomal protein S5