IL_6R6G_274
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGAAUUU*AUUAGUCA
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_274 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.1584
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.2
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
6R6G|1|5|U|31
6R6G|1|5|G|32
6R6G|1|5|A|33
6R6G|1|5|A|34
6R6G|1|5|U|35
6R6G|1|5|U|36
6R6G|1|5|U|37
*
6R6G|1|5|A|44
6R6G|1|5|U|45
6R6G|1|5|U|46
6R6G|1|5|A|47
6R6G|1|5|G|48
6R6G|1|5|U|49
6R6G|1|5|C|50
6R6G|1|5|A|51
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain a
- uL15
- Chain j
- Ribosomal protein L37
- Chain o
- eL42
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