3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGAAU*AAAUGUG
Length
12 nucleotides
Bulged bases
6R6G|1|5|G|119, 6R6G|1|5|U|150
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6R6G|1|5|C|118
6R6G|1|5|G|119
6R6G|1|5|A|120
6R6G|1|5|A|121
6R6G|1|5|U|122
*
6R6G|1|5|A|147
6R6G|1|5|A|148
6R6G|1|5|A|149
6R6G|1|5|U|150
6R6G|1|5|G|151
6R6G|1|5|U|152
6R6G|1|5|G|153

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain G
eL8
Chain N
Ribosomal protein L15
Chain h
uL29

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1048 s
Application loaded.