IL_6R6G_279

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUCC*GGCCCG

Length

10 nucleotides

Bulged bases

6R6G|1|5|C|810, 6R6G|1|5|C|811

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_279 not in the Motif Atlas

Geometric match to IL_7KJT_003

Geometric discrepancy: 0.3763

The information below is about IL_7KJT_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

56

Unit IDs

6R6G|1|5|C|747
6R6G|1|5|U|748
6R6G|1|5|C|749
6R6G|1|5|C|750
*
6R6G|1|5|G|808
6R6G|1|5|G|809
6R6G|1|5|C|810
6R6G|1|5|C|811
6R6G|1|5|C|812
6R6G|1|5|G|813

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain F

uL30

Chain b

eL29