IL_6R6G_286

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GACG*CUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_286 not in the Motif Atlas

Geometric match to IL_4V9F_053

Geometric discrepancy: 0.3285

The information below is about IL_4V9F_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6R6G|1|5|G|1869
6R6G|1|5|A|1870
6R6G|1|5|C|1871
6R6G|1|5|G|1872
*
6R6G|1|5|C|1892
6R6G|1|5|U|1893
6R6G|1|5|C|1894

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain X

uL23