IL_6R6G_287

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

6R6G|1|5|G|2537

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_287 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.133

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

6R6G|1|5|G|2240
6R6G|1|5|G|2241
6R6G|1|5|A|2242
6R6G|1|5|A|2243
6R6G|1|5|G|2244
6R6G|1|5|U|2245
6R6G|1|5|C|2246
6R6G|1|5|G|2247
6R6G|1|5|G|2248
*
6R6G|1|5|C|2535
6R6G|1|5|U|2536
6R6G|1|5|G|2537
6R6G|1|5|U|2538
6R6G|1|5|C|2539

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain V

eL14