IL_6R6G_290

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGU*ACAG

Length

7 nucleotides

Bulged bases

6R6G|1|5|A|3118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_290 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.2326

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6R6G|1|5|C|3107
6R6G|1|5|G|3108
6R6G|1|5|U|3109
*
6R6G|1|5|A|3116
6R6G|1|5|C|3117
6R6G|1|5|A|3118
6R6G|1|5|G|3119

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain A

uL2