IL_6R6G_303

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGACAGGAUUG*CUCGAUUCC

Length

20 nucleotides

Bulged bases

6R6G|1|K|G|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6G|1|K|G|1280
6R6G|1|K|G|1281
6R6G|1|K|A|1282
6R6G|1|K|C|1283
6R6G|1|K|A|1284
6R6G|1|K|G|1285
6R6G|1|K|G|1286
6R6G|1|K|A|1287
6R6G|1|K|U|1288
6R6G|1|K|U|1289
6R6G|1|K|G|1290
*
6R6G|1|K|C|1309
6R6G|1|K|U|1310
6R6G|1|K|C|1311
6R6G|1|K|G|1312
6R6G|1|K|A|1313
6R6G|1|K|U|1314
6R6G|1|K|U|1315
6R6G|1|K|C|1316
6R6G|1|K|C|1317

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain 0

eS31

Chain 9

uS14

Chain RR

40S ribosomal protein S12

Chain SS

eS10