IL_6R6G_305

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCUCAGCGUG*CCGUUGAACCC

Length

21 nucleotides

Bulged bases

6R6G|1|K|U|1585, 6R6G|1|K|G|1587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6G|1|K|G|1541
6R6G|1|K|C|1542
6R6G|1|K|U|1543
6R6G|1|K|C|1544
6R6G|1|K|A|1545
6R6G|1|K|G|1546
6R6G|1|K|C|1547
6R6G|1|K|G|1548
6R6G|1|K|U|1549
6R6G|1|K|G|1550
*
6R6G|1|K|C|1582
6R6G|1|K|C|1583
6R6G|1|K|G|1584
6R6G|1|K|U|1585
6R6G|1|K|U|1586
6R6G|1|K|G|1587
6R6G|1|K|A|1588
6R6G|1|K|A|1589
6R6G|1|K|C|1590
6R6G|1|K|C|1591
6R6G|1|K|C|1592

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain 9

uS14

Chain GG

Ribosomal protein S20

Chain OO

ribosomal protein eS25

Chain PP

eS19

Chain UU

Ribosomal protein S16

Chain w

Ribosomal protein S3

Chain y

Ribosomal protein S5