IL_6R6G_306

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

6R6G|1|5|U|3007

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_306 not in the Motif Atlas

Homologous match to IL_8CRE_113

Geometric discrepancy: 0.2286

The information below is about IL_8CRE_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6R6G|1|5|G|2975
6R6G|1|5|U|2976
6R6G|1|5|G|2977
*
6R6G|1|5|U|3005
6R6G|1|5|U|3006
6R6G|1|5|U|3007
6R6G|1|5|U|3008
6R6G|1|5|U|3009

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain I

Ribosomal protein L10 (Predicted)