IL_6R6G_308

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

6R6G|1|5|G|3524

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_308 not in the Motif Atlas

Homologous match to IL_8CRE_138

Geometric discrepancy: 0.2273

The information below is about IL_8CRE_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43622.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6R6G|1|5|G|3480
6R6G|1|5|U|3481
6R6G|1|5|U|3482
*
6R6G|1|5|G|3520
6R6G|1|5|U|3521
6R6G|1|5|C|3522
6R6G|1|5|A|3523
6R6G|1|5|G|3524
6R6G|1|5|C|3525

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain d

eL31