IL_6R6P_025

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUCC*GGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_025 not in the Motif Atlas

Geometric match to IL_2A64_008

Geometric discrepancy: 0.375

The information below is about IL_2A64_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

6R6P|1|5|G|482
6R6P|1|5|G|483
6R6P|1|5|U|484
6R6P|1|5|C|485
6R6P|1|5|C|486
*
6R6P|1|5|G|670
6R6P|1|5|G|671
6R6P|1|5|C|672

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain r

eL28