IL_6R6P_026

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCC*GCGAC

Length

8 nucleotides

Bulged bases

6R6P|1|5|G|666

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_026 not in the Motif Atlas

Geometric match to IL_4M4O_004

Geometric discrepancy: 0.3382

The information below is about IL_4M4O_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6R6P|1|5|G|488
6R6P|1|5|C|489
6R6P|1|5|C|490
*
6R6P|1|5|G|664
6R6P|1|5|C|665
6R6P|1|5|G|666
6R6P|1|5|A|667
6R6P|1|5|C|668

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain r

eL28