IL_6R6P_030

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

6R6P|1|5|C|502, 6R6P|1|5|C|503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_030 not in the Motif Atlas

Geometric match to IL_4V9F_005

Geometric discrepancy: 0.261

The information below is about IL_4V9F_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6R6P|1|5|G|500
6R6P|1|5|C|501
6R6P|1|5|C|502
6R6P|1|5|C|503
6R6P|1|5|G|504
6R6P|1|5|G|505
*
6R6P|1|5|U|653
6R6P|1|5|C|654

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain Q

eL18