IL_6R6P_032

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUUC*GGG

Length

8 nucleotides

Bulged bases

6R6P|1|5|U|513, 6R6P|1|5|U|514

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_032 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2198

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

6R6P|1|5|C|511
6R6P|1|5|U|512
6R6P|1|5|U|513
6R6P|1|5|U|514
6R6P|1|5|C|515
*
6R6P|1|5|G|646
6R6P|1|5|G|647
6R6P|1|5|G|648

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain a

uL15