IL_6R6P_036

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGG*CAGCAGCACUC

Length

16 nucleotides

Bulged bases

6R6P|1|5|G|933, 6R6P|1|5|A|935, 6R6P|1|5|C|936, 6R6P|1|5|U|937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6P|1|5|G|731
6R6P|1|5|A|732
6R6P|1|5|A|733
6R6P|1|5|G|734
6R6P|1|5|G|735
*
6R6P|1|5|C|928
6R6P|1|5|A|929
6R6P|1|5|G|930
6R6P|1|5|C|931
6R6P|1|5|A|932
6R6P|1|5|G|933
6R6P|1|5|C|934
6R6P|1|5|A|935
6R6P|1|5|C|936
6R6P|1|5|U|937
6R6P|1|5|C|938

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain M

Ribosomal protein L14

Chain S

eL20