IL_6R6P_039

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6P|1|5|G|745
6R6P|1|5|A|746
6R6P|1|5|A|747
6R6P|1|5|G|748
6R6P|1|5|G|749
6R6P|1|5|U|750
6R6P|1|5|G|751
6R6P|1|5|G|752
*
6R6P|1|5|U|911
6R6P|1|5|G|912
6R6P|1|5|U|913
6R6P|1|5|U|914
6R6P|1|5|A|915
6R6P|1|5|C|916
6R6P|1|5|A|917
6R6P|1|5|G|918
6R6P|1|5|C|919

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain M

Ribosomal protein L14

Chain S

eL20