IL_6R6P_057

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_057 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.1425

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6R6P|1|5|C|1551
6R6P|1|5|G|1552
6R6P|1|5|A|1553
6R6P|1|5|A|1554
6R6P|1|5|G|1555
*
6R6P|1|5|U|1572
6R6P|1|5|G|1573
6R6P|1|5|G|1574
6R6P|1|5|A|1575
6R6P|1|5|G|1576

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain R

eL19

Chain p

ribosomal protein eL43