IL_6R6P_063

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUCGCACACGCAGU*AAUGG

Length

19 nucleotides

Bulged bases

6R6P|1|5|G|1697, 6R6P|1|5|C|1698, 6R6P|1|5|A|1699, 6R6P|1|5|C|1718, 6R6P|1|5|A|1719, 6R6P|1|5|G|1724

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6P|1|5|C|1694
6R6P|1|5|U|1695
6R6P|1|5|C|1696
6R6P|1|5|G|1697
6R6P|1|5|C|1698
6R6P|1|5|A|1699
6R6P|1|5|C|1718
6R6P|1|5|A|1719
6R6P|1|5|C|1720
6R6P|1|5|G|1721
6R6P|1|5|C|1722
6R6P|1|5|A|1723
6R6P|1|5|G|1724
6R6P|1|5|U|1725
*
6R6P|1|5|A|1837
6R6P|1|5|A|1838
6R6P|1|5|U|1839
6R6P|1|5|G|1840
6R6P|1|5|G|1842

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain F

uL30

Chain Q

eL18

Chain T

eL21

Chain b

60S ribosomal protein L29