IL_6R6P_080

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUAUAGACAG*CCGAAU

Length

16 nucleotides

Bulged bases

6R6P|1|5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6P|1|5|A|1956
6R6P|1|5|U|1957
6R6P|1|5|A|1958
6R6P|1|5|U|1959
6R6P|1|5|A|1960
6R6P|1|5|G|1961
6R6P|1|5|A|1962
6R6P|1|5|C|1963
6R6P|1|5|A|1964
6R6P|1|5|G|1965
*
6R6P|1|5|C|2022
6R6P|1|5|C|2023
6R6P|1|5|G|2024
6R6P|1|5|A|2025
6R6P|1|5|A|2026
6R6P|1|5|U|2027

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain S

eL20

Chain m

eL40

Chain s

60S acidic ribosomal protein P0