IL_6R6P_085

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

6R6P|1|5|A|2300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_085 not in the Motif Atlas

Geometric match to IL_3OXE_001

Geometric discrepancy: 0.3139

The information below is about IL_3OXE_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

6R6P|1|5|G|2299
6R6P|1|5|A|2300
6R6P|1|5|G|2301
*
6R6P|1|5|C|2334
6R6P|1|5|C|2335

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain C

uL4

Chain e

eL32

Chain r

eL28