IL_6R6P_117

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_117 not in the Motif Atlas

Homologous match to IL_8C3A_094

Geometric discrepancy: 0.1057

The information below is about IL_8C3A_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

6R6P|1|5|G|3780
6R6P|1|5|C|3781
*
6R6P|1|5|G|3811
6R6P|1|5|C|3812
6R6P|1|5|A|3813
6R6P|1|5|U|3814

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain n

60s ribosomal protein l41