IL_6R6P_125
3D structure
- PDB id
- 6R6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGCG*CUC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6P_125 not in the Motif Atlas
- Geometric match to IL_5TBW_044
- Geometric discrepancy: 0.3365
- The information below is about IL_5TBW_044
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6R6P|1|5|G|4094
6R6P|1|5|G|4095
6R6P|1|5|C|4096
6R6P|1|5|G|4097
*
6R6P|1|5|C|4112
6R6P|1|5|U|4113
6R6P|1|5|C|4114
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- uL2
- Chain G
- eL8
- Chain g
- eL34
- Chain u
- 40S ribosomal protein S3a
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