IL_6R6P_176

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

6R6P|1|K|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_176 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3611

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

6R6P|1|K|C|37
6R6P|1|K|A|38
6R6P|1|K|A|39
6R6P|1|K|A|40
*
6R6P|1|K|U|514
6R6P|1|K|G|515
6R6P|1|K|A|516
6R6P|1|K|C|517
6R6P|1|K|G|518

Current chains

Chain K

18S rRNA

Nearby chains

Chain NN

eS24

Chain XX

Ribosomal protein S9 (Predicted)

Chain x

40S ribosomal protein S4