IL_6R6P_187

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUG*UAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_187 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.391

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

6R6P|1|K|U|152
6R6P|1|K|G|153
6R6P|1|K|U|154
6R6P|1|K|G|155
*
6R6P|1|K|U|163
6R6P|1|K|A|164
6R6P|1|K|G|165
6R6P|1|K|A|166

Current chains

Chain K

18S rRNA

Nearby chains

Chain NN

eS24

Chain z

40S ribosomal protein S6