IL_6R6P_194

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6R6P|1|K|U|368, 6R6P|1|K|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_194 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.3021

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6R6P|1|K|U|366
6R6P|1|K|U|367
6R6P|1|K|U|368
6R6P|1|K|C|369
6R6P|1|K|G|370
6R6P|1|K|A|371
*
6R6P|1|K|U|393
6R6P|1|K|G|394

Current chains

Chain K

18S rRNA

Nearby chains

Chain CC

40S ribosomal protein S8

Chain EE

Ribosomal protein S11