IL_6R6P_203

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_203 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.3147

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

6R6P|1|K|G|563
6R6P|1|K|A|564
6R6P|1|K|G|565
*
6R6P|1|K|C|585
6R6P|1|K|G|586
6R6P|1|K|A|587
6R6P|1|K|G|588
6R6P|1|K|G|589
6R6P|1|K|A|590
6R6P|1|K|U|591
6R6P|1|K|C|592

Current chains

Chain K

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein S30

Chain XX

Ribosomal protein S9 (Predicted)