IL_6R6P_205

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

6R6P|1|K|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6P|1|K|A|599
6R6P|1|K|G|600
6R6P|1|K|G|601
6R6P|1|K|G|602
6R6P|1|K|C|603
6R6P|1|K|A|604
6R6P|1|K|A|605
6R6P|1|K|G|606
6R6P|1|K|U|607
6R6P|1|K|C|608
*
6R6P|1|K|G|635
6R6P|1|K|C|636
6R6P|1|K|U|637

Current chains

Chain K

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein S30

Chain DD

Ribosomal protein S3

Chain XX

Ribosomal protein S9 (Predicted)

Chain v

uS5