IL_6R6P_211

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_211 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.3252

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6R6P|1|K|G|692
6R6P|1|K|A|693
6R6P|1|K|G|694
6R6P|1|K|C|695
*
6R6P|1|K|G|731
6R6P|1|K|U|732
6R6P|1|K|C|733
6R6P|1|K|C|734

Current chains

Chain K

18S rRNA

Nearby chains

Chain TT

Ribosomal protein S15a

Chain y

40S ribosomal protein S7