IL_6R6P_217

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_217 not in the Motif Atlas

Geometric match to IL_4YHW_001

Geometric discrepancy: 0.1229

The information below is about IL_4YHW_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6R6P|1|K|G|874
6R6P|1|K|A|875
6R6P|1|K|C|876
*
6R6P|1|K|G|910
6R6P|1|K|C|911
6R6P|1|K|C|912

Current chains

Chain K

18S rRNA

Nearby chains

Chain EE

Ribosomal protein S11

Chain y

40S ribosomal protein S7