IL_6R6P_229

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_229 not in the Motif Atlas

Geometric match to IL_7RQB_034

Geometric discrepancy: 0.2119

The information below is about IL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

6R6P|1|K|U|1101
6R6P|1|K|G|1102
6R6P|1|K|C|1103
*
6R6P|1|K|G|1129
6R6P|1|K|G|1130
6R6P|1|K|G|1131

Current chains

Chain K

18S rRNA

Nearby chains

Chain JJ

40S ribosomal protein S27

Chain QQ

ribosomal protein uS15

Chain YY

eS17

Chain ZZ

eS26

Chain u

40S ribosomal protein S3a