IL_6R6P_247
3D structure
- PDB id
- 6R6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 6R6P|1|K|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6P_247 not in the Motif Atlas
- Geometric match to IL_5LQO_002
- Geometric discrepancy: 0.3999
- The information below is about IL_5LQO_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6R6P|1|K|C|1395
6R6P|1|K|A|1396
6R6P|1|K|U|1397
6R6P|1|K|G|1398
6R6P|1|K|C|1399
*
6R6P|1|K|G|1447
6R6P|1|K|A|1448
6R6P|1|K|G|1449
6R6P|1|K|G|1450
Current chains
- Chain K
- 18S rRNA
Nearby chains
- Chain 6
- ribosomal protein RACK1
- Chain DD
- Ribosomal protein S3
- Chain GG
- uS10
- Chain UU
- Ribosomal protein S16
- Chain YY
- eS17
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