IL_6R6P_250

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_250 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.1187

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6R6P|1|K|A|1537
6R6P|1|K|C|1538
6R6P|1|K|U|1539
*
6R6P|1|K|A|1594
6R6P|1|K|U|1595
6R6P|1|K|U|1596

Current chains

Chain K

18S rRNA

Nearby chains

Chain BB

Ribosomal protein S5

Chain II

uS13

Chain OO

ribosomal protein eS25

Chain PP

eS19