IL_6R6P_262

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_262 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.0957

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6R6P|1|K|C|1739
6R6P|1|K|C|1740
6R6P|1|K|U|1741
*
6R6P|1|K|A|1793
6R6P|1|K|C|1794
6R6P|1|K|G|1795

Current chains

Chain K

18S rRNA

Nearby chains

Chain CC

40S ribosomal protein S8

Chain W

Ribosomal protein L24

Chain z

40S ribosomal protein S6