IL_6R6P_277

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCUCGGAUAG*UGCGGAGUGC

Length

21 nucleotides

Bulged bases

6R6P|1|5|C|4756, 6R6P|1|5|C|4757, 6R6P|1|5|U|4763, 6R6P|1|5|C|4871, 6R6P|1|5|G|4872, 6R6P|1|5|A|4874, 6R6P|1|5|G|4877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6P|1|5|G|4755
6R6P|1|5|C|4756
6R6P|1|5|C|4757
6R6P|1|5|U|4758
6R6P|1|5|C|4759
6R6P|1|5|G|4760
6R6P|1|5|G|4761
6R6P|1|5|A|4762
6R6P|1|5|U|4763
6R6P|1|5|A|4764
6R6P|1|5|G|4765
*
6R6P|1|5|U|4869
6R6P|1|5|G|4870
6R6P|1|5|C|4871
6R6P|1|5|G|4872
6R6P|1|5|G|4873
6R6P|1|5|A|4874
6R6P|1|5|G|4875
6R6P|1|5|U|4876
6R6P|1|5|G|4877
6R6P|1|5|C|4878

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain H

uL6

Chain M

Ribosomal protein L14

Chain O

uL13

Chain S

eL20