IL_6R6P_283

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACCAC*GUCCCU

Length

11 nucleotides

Bulged bases

6R6P|1|K|C|1215, 6R6P|1|K|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6P|1|K|A|1214
6R6P|1|K|C|1215
6R6P|1|K|C|1216
6R6P|1|K|A|1217
6R6P|1|K|C|1218
*
6R6P|1|K|G|1680
6R6P|1|K|U|1681
6R6P|1|K|C|1682
6R6P|1|K|C|1683
6R6P|1|K|C|1684
6R6P|1|K|U|1685

Current chains

Chain K

18S rRNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain 4

mRNA

Chain BB

Ribosomal protein S5

Chain FF

Ribosomal protein S28

Chain UU

Ribosomal protein S16

Chain ZZ

eS26