IL_6R7Q_025

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

6R7Q|1|5|C|481|||A

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R7Q_025 not in the Motif Atlas

Geometric match to IL_3HHN_003

Geometric discrepancy: 0.3362

The information below is about IL_3HHN_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

6R7Q|1|5|G|481
6R7Q|1|5|C|481|||A
6R7Q|1|5|G|482
*
6R7Q|1|5|C|672
6R7Q|1|5|C|673

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain r

eL28